White-beaked dolphin · Lagenorhynchus albirostris (Gray, 1846)
EBP Reference Genome
Permissions Declared
Openly Accessible Data
Contributors (view full details)
| Metric | Value | Links |
|---|---|---|
| DOI | 10.1234/ebpr23.3333 | |
| bioproject | PRJEB12345 | NCBI · ENA |
| biosample | SAMEA12345678 | NCBI · ENA |
| tolid | dLagAlb1 | |
| pacbioSampleAccession | SAMEA12345679 | |
| pacbioOrganismPart | muscle | |
| hicTolid | dLagAlb2 | |
| hicSampleAccession | SAMEA12345680 | |
| hicOrganismPart | brain | |
| rnaTolid | dLagAlb3 | |
| rnaSampleAccession | SAMEA12345681 | |
| rnaOrganismPart | liver | |
| assemblyName | dLagAlb1.1 | |
| assemblyAccession | GCA_123456789.1 | |
| alternateAccession | GCA_123456790.1 | |
| lengthTotalMb | 3000 | Definition |
| contigCount | 500 | Definition |
| contigN50 | 10 | |
| scaffoldCount | 100 | |
| scaffoldN50 | 50 | Definition |
| longestScaffold | 100 | Definition |
| QV | 60 | Definition |
| k_mer | 100 | |
| buscoString | C:95.0%[S:90.0%,D:5.0%],F:3.0%,M:2.0%,n:4,000 eukaryota_odb10 | |
| assemblyPercent | 99 | |
| sexChromosomes | XY | |
| lengthMitoKb | 16.5 | |
| lengthPlastidKb | 0 | |
| chromosomeCount | 22 | |
| proteinGeneCount | 20000 | |
| nonCodingCount | 1500 | |
| transcriptCount | 50000 | |
| observedSex | male | |
| pacbioCollectionLocation | North Atlantic | |
| pacbioBasesGb | 30 | |
| pacbioReadsMillions | 3 | |
| lrCov | 50 | |
| hicBaseCountGb | 150 | |
| hicReadsMillions | 900 | |
| manualBreaksAndJoins | 10 | |
| manualHaplotigRemovals | 2 | |
| scaffoldLengthChange | 5 | |
| scaffoldCountChange | 1 | |
| scaffoldN50Change | 0.5 | |
| gapCount | 200 | |
| autosomesCount | 21 | |
| manualNote | This is a manual note. | |
| buscoLineage | Eukaryota_odb10 | |
| buscoN | 4 | |
| buscoCompleteness | 95 | |
| buscoSingle | 90 | |
| buscoDuplicated | 5 |
