Types

Project

ugnr/project

  • id string
  • name string
  • slug string
  • website string
  • bioprojectId string

Species

ugnr/species

  • id string
  • slug string
  • commonName string
  • image string
  • imageAttribution string
  • species string
  • genus string
  • family string
  • order string
  • class string
  • phylum string
  • taxonomyAuthor string
  • ncbiTaxId string

Genome Note

ugnr/genome-note

  • id string
  • genomeId string
  • content string
  • DOI string
  • bioproject string
  • biosample string
  • tolid string
  • pacbioSampleAccession string
  • pacbioOrganismPart string
  • hicTolid string
  • hicSampleAccession string
  • hicOrganismPart string
  • rnaTolid string
  • rnaSampleAccession string
  • rnaOrganismPart string
  • assemblyName string
  • assemblyAccession string
  • alternateAccession string
  • lengthTotalMb number
  • contigCount number
  • contigN50 number
  • scaffoldCount number
  • scaffoldN50 number
  • longestScaffold number
  • QV number
  • k_mer number
  • buscoString string
  • assemblyPercent number
  • sexChromosomes string
  • lengthMitoKb number
  • lengthPlastidKb number
  • chromosomeCount number
  • proteinGeneCount number
  • nonCodingCount number
  • transcriptCount number
  • observedSex string
  • pacbioCollectionLocation string
  • pacbioBasesGb number
  • pacbioReadsMillions number
  • lrCov number
  • hicBaseCountGb number
  • hicReadsMillions number
  • manualBreaksAndJoins number
  • manualHaplotigRemovals number
  • scaffoldLengthChange number
  • scaffoldCountChange number
  • scaffoldN50Change number
  • gapCount number
  • autosomesCount number
  • manualNote string
  • buscoLineage string
  • buscoN number
  • buscoCompleteness number
  • buscoSingle number
  • buscoDuplicated number

Author

ugnr/author

  • id string
  • name string
  • slug string
  • affiliation string
  • orcid string

Contributor

ugnr/contributor

  • id string
  • authorId string
  • genomeNoteId string
  • roles object
  • pacbioCollector boolean
  • rnaCollector boolean
  • hicCollector boolean

Technical Review

ugnr/technical-review

  • id string
  • genomeNoteId string
  • contigN50Pass boolean
  • scaffoldN50Pass boolean
  • gapsPass boolean
  • qvPass boolean
  • kmerPass boolean
  • buscoPass boolean
  • percentAssemblyPass boolean
  • sexChromosomePass boolean
  • organellePass boolean

Manual Review

ugnr/manual-review

  • id string
  • authorId string
  • genomeNoteId string
  • content string
  • sufficientMethodsForReplication boolean
  • protocolsAppropriate boolean
  • technicallySound boolean
  • competingInterests string

Comment

ugnr/comment

  • id string
  • authorId string
  • genomeId string
  • postId string
  • parentCommentId string
  • content string

Post

ugnr/post

  • id string
  • authorId string
  • title string
  • content string
  • slug string

Protocol

ugnr/protocol

  • id string
  • name string
  • slug string
  • protocolUrl string
  • content string
  • doi string

Collective Author

ugnr/collective-author

  • id string
  • title string
  • authorIds object
  • genomeNoteId string
  • doi string
  • description string
  • roles string