Sole · Solea solea (Linnaeus, 1758)
EBP Reference Genome
Permissions Declared
Openly Accessible Data
Contributors (view full details)
| Metric | Value | Links |
|---|---|---|
| DOI | 10.1234/ebpr23.1973 | |
| bioproject | PRJEB61337 | NCBI · ENA |
| biosample | SAMEA10984647 | NCBI · ENA |
| tolid | fSolSol10 | |
| pacbioSampleAccession | SAMEA10984681 | |
| pacbioOrganismPart | gonad | |
| hicTolid | fSolSol10 | |
| hicSampleAccession | SAMEA10984680 | |
| hicOrganismPart | gill animal | |
| rnaTolid | fSolSol7 | |
| rnaSampleAccession | SAMEA10984669 | |
| rnaOrganismPart | gonad | |
| assemblyName | fSolSol10 | |
| assemblyAccession | GCA_958295425.1 | |
| alternateAccession | GCA_958295035.1 | |
| lengthTotalMb | 643.8 | Definition |
| contigCount | 616 | Definition |
| contigN50 | 2.6 | |
| scaffoldCount | 242 | |
| scaffoldN50 | 29.1 | Definition |
| longestScaffold | 47.06 | Definition |
| QV | 60.9 | Definition |
| k_mer | 100 | |
| buscoString | C:98.3%[S:97.2%,D:1.1%],F:0.5%,M:1.2%,n:3,640 eukaryota_odb10 | |
| assemblyPercent | 97.81 | |
| sexChromosomes | Not identified | |
| lengthMitoKb | 17.03 | |
| lengthPlastidKb | 0 | |
| chromosomeCount | 21 | |
| proteinGeneCount | 21646 | |
| nonCodingCount | 1553 | |
| transcriptCount | 51064 | |
| observedSex | female | |
| pacbioCollectionLocation | East Atlantic | |
| pacbioBasesGb | 20.96 | |
| pacbioReadsMillions | 2.27 | |
| lrCov | 32 | |
| hicBaseCountGb | 130.51 | |
| hicReadsMillions | 864.29 | |
| manualBreaksAndJoins | 22 | |
| manualHaplotigRemovals | 3 | |
| scaffoldLengthChange | 2.8 | |
| scaffoldCountChange | 2 | |
| scaffoldN50Change | 0.21 | |
| gapCount | 373 | |
| autosomesCount | 22 | |
| manualNote | This is a manual note. | |
| buscoLineage | Eukaryota_odb10 | |
| buscoN | 3 | |
| buscoCompleteness | 98.3 | |
| buscoSingle | 97.2 | |
| buscoDuplicated | 1.1 |
