Phoenix · Phoenix rebornis (Merlinus, 1022)
EBP Reference Genome
Permissions Declared
Openly Accessible Data
Contributors (view full details)
| Metric | Value | Links |
|---|---|---|
| DOI | 10.1234/ebpr23.1111 | |
| bioproject | PRJEB90123 | NCBI · ENA |
| biosample | SAMEA90123456 | NCBI · ENA |
| tolid | gGalGal1 | |
| pacbioSampleAccession | SAMEA90123457 | |
| pacbioOrganismPart | feather | |
| hicTolid | gGalGal2 | |
| hicSampleAccession | SAMEA90123458 | |
| hicOrganismPart | blood | |
| rnaTolid | gGalGal3 | |
| rnaSampleAccession | SAMEA90123459 | |
| rnaOrganismPart | liver | |
| assemblyName | gGalGal1.1 | |
| assemblyAccession | GCA_901234567.1 | |
| alternateAccession | GCA_901234568.1 | |
| lengthTotalMb | 1600 | Definition |
| contigCount | 320 | Definition |
| contigN50 | 13 | |
| scaffoldCount | 65 | |
| scaffoldN50 | 57 | Definition |
| longestScaffold | 115 | Definition |
| QV | 61.8 | Definition |
| k_mer | 100 | |
| buscoString | C:97.7%[S:93.7%,D:4.0%],F:2.1%,M:0.2%,n:4,700 eukaryota_odb10 | |
| assemblyPercent | 99.2 | |
| sexChromosomes | ZW | |
| lengthMitoKb | 16.9 | |
| lengthPlastidKb | 0 | |
| chromosomeCount | 24 | |
| proteinGeneCount | 22500 | |
| nonCodingCount | 1750 | |
| transcriptCount | 53500 | |
| observedSex | female | |
| pacbioCollectionLocation | South America | |
| pacbioBasesGb | 57 | |
| pacbioReadsMillions | 5.7 | |
| lrCov | 77 | |
| hicBaseCountGb | 175 | |
| hicReadsMillions | 1070 | |
| manualBreaksAndJoins | 21 | |
| manualHaplotigRemovals | 4 | |
| scaffoldLengthChange | 7.1 | |
| scaffoldCountChange | 3 | |
| scaffoldN50Change | 0.7 | |
| gapCount | 310 | |
| autosomesCount | 23 | |
| manualNote | This is a manual note. | |
| buscoLineage | Eukaryota_odb10 | |
| buscoN | 5 | |
| buscoCompleteness | 97.7 | |
| buscoSingle | 93.7 | |
| buscoDuplicated | 4 |
