Large blue butterfly · Phengaris arion (Linnaeus, 1758)
EBP Reference Genome
Permissions Declared
Openly Accessible Data
Contributors (view full details)
| Metric | Value | Links |
|---|---|---|
| DOI | 10.1234/ebpr23.2278 | |
| bioproject | PRJEB65386 | NCBI · ENA |
| biosample | SAMEA112232493 | NCBI · ENA |
| tolid | ilPheArio1 | |
| pacbioSampleAccession | SAMEA112232932 | |
| pacbioOrganismPart | thorax | |
| hicTolid | ilPheArio2 | |
| hicSampleAccession | SAMEA112232934 | |
| hicOrganismPart | head | |
| rnaTolid | ||
| rnaSampleAccession | ||
| rnaOrganismPart | ||
| assemblyName | ilPheArio1.1 | |
| assemblyAccession | GCA_963565745.1 | |
| alternateAccession | GCA_963565765.1 | |
| lengthTotalMb | 544.5 | Definition |
| contigCount | 195 | Definition |
| contigN50 | 11 | |
| scaffoldCount | 29 | |
| scaffoldN50 | 24 | Definition |
| longestScaffold | 48.13 | Definition |
| QV | 61.2 | Definition |
| k_mer | 100 | |
| buscoString | C:97.4%[S:97.0%,D:0.4%],F:0.5%,M:2.1%,n:5,286 eukaryota_odb10 | |
| assemblyPercent | 99.93 | |
| sexChromosomes | Z | |
| lengthMitoKb | 15.7 | |
| lengthPlastidKb | 0 | |
| chromosomeCount | 23 | |
| proteinGeneCount | 21646 | |
| nonCodingCount | 1553 | |
| transcriptCount | 51064 | |
| observedSex | female | |
| pacbioCollectionLocation | East Atlantic | |
| pacbioBasesGb | 84.99 | |
| pacbioReadsMillions | 7.03 | |
| lrCov | 142 | |
| hicBaseCountGb | 110.65 | |
| hicReadsMillions | 732.78 | |
| manualBreaksAndJoins | 108 | |
| manualHaplotigRemovals | 3 | |
| scaffoldLengthChange | 76 | |
| scaffoldCountChange | 2 | |
| scaffoldN50Change | 0.21 | |
| gapCount | 165 | |
| autosomesCount | 22 | |
| manualNote | This is a manual note. | |
| buscoLineage | Eukaryota_odb10 | |
| buscoN | 5 | |
| buscoCompleteness | 97.4 | |
| buscoSingle | 97 | |
| buscoDuplicated | 0.4 |
