Griffin · Griffus avileonis (Merlinus, 1022)
EBP Reference Genome
Permissions Declared
Openly Accessible Data
Contributors (view full details)
| Metric | Value | Links |
|---|---|---|
| DOI | 10.1234/ebpr23.1212 | |
| bioproject | PRJEB01234 | NCBI · ENA |
| biosample | SAMEA01234567 | NCBI · ENA |
| tolid | gGriAvi1 | |
| pacbioSampleAccession | SAMEA01234568 | |
| pacbioOrganismPart | feather | |
| hicTolid | gGriAvi2 | |
| hicSampleAccession | SAMEA01234569 | |
| hicOrganismPart | blood | |
| rnaTolid | gGriAvi3 | |
| rnaSampleAccession | SAMEA01234570 | |
| rnaOrganismPart | liver | |
| assemblyName | gGriAvi1.1 | |
| assemblyAccession | GCA_012345678.1 | |
| alternateAccession | GCA_012345679.1 | |
| lengthTotalMb | 1700 | Definition |
| contigCount | 340 | Definition |
| contigN50 | 14 | |
| scaffoldCount | 70 | |
| scaffoldN50 | 58 | Definition |
| longestScaffold | 116 | Definition |
| QV | 61.9 | Definition |
| k_mer | 100 | |
| buscoString | C:97.8%[S:93.8%,D:4.0%],F:2.1%,M:0.1%,n:4,800 eukaryota_odb10 | |
| assemblyPercent | 99.3 | |
| sexChromosomes | ZW | |
| lengthMitoKb | 17 | |
| lengthPlastidKb | 0 | |
| chromosomeCount | 24 | |
| proteinGeneCount | 22600 | |
| nonCodingCount | 1760 | |
| transcriptCount | 53600 | |
| observedSex | female | |
| pacbioCollectionLocation | South America | |
| pacbioBasesGb | 58 | |
| pacbioReadsMillions | 5.8 | |
| lrCov | 78 | |
| hicBaseCountGb | 176 | |
| hicReadsMillions | 1080 | |
| manualBreaksAndJoins | 22 | |
| manualHaplotigRemovals | 4 | |
| scaffoldLengthChange | 7.2 | |
| scaffoldCountChange | 3 | |
| scaffoldN50Change | 0.7 | |
| gapCount | 320 | |
| autosomesCount | 23 | |
| manualNote | This is a manual note. | |
| buscoLineage | Eukaryota_odb10 | |
| buscoN | 5 | |
| buscoCompleteness | 97.8 | |
| buscoSingle | 93.8 | |
| buscoDuplicated | 4 |
