European hedgehog · Erinaceus europaeus (Linnaeus, 1758)
EBP Reference Genome
Permissions Declared
Openly Accessible Data
Contributors (view full details)
| Metric | Value | Links |
|---|---|---|
| DOI | 10.1234/ebpr23.5555 | |
| bioproject | PRJEB34567 | NCBI · ENA |
| biosample | SAMEA34567890 | NCBI · ENA |
| tolid | hSapSap1 | |
| pacbioSampleAccession | SAMEA34567891 | |
| pacbioOrganismPart | blood | |
| hicTolid | hSapSap2 | |
| hicSampleAccession | SAMEA34567892 | |
| hicOrganismPart | brain | |
| rnaTolid | hSapSap3 | |
| rnaSampleAccession | SAMEA34567893 | |
| rnaOrganismPart | liver | |
| assemblyName | hSapSap1.1 | |
| assemblyAccession | GCA_345678901.1 | |
| alternateAccession | GCA_345678902.1 | |
| lengthTotalMb | 3200 | Definition |
| contigCount | 600 | Definition |
| contigN50 | 20 | |
| scaffoldCount | 120 | |
| scaffoldN50 | 70 | Definition |
| longestScaffold | 140 | Definition |
| QV | 62 | Definition |
| k_mer | 100 | |
| buscoString | C:97.0%[S:93.0%,D:4.0%],F:2.0%,M:1.0%,n:5,000 eukaryota_odb10 | |
| assemblyPercent | 99.5 | |
| sexChromosomes | XY | |
| lengthMitoKb | 16.6 | |
| lengthPlastidKb | 0 | |
| chromosomeCount | 24 | |
| proteinGeneCount | 22000 | |
| nonCodingCount | 1700 | |
| transcriptCount | 53000 | |
| observedSex | male | |
| pacbioCollectionLocation | North America | |
| pacbioBasesGb | 50 | |
| pacbioReadsMillions | 5 | |
| lrCov | 70 | |
| hicBaseCountGb | 170 | |
| hicReadsMillions | 1100 | |
| manualBreaksAndJoins | 20 | |
| manualHaplotigRemovals | 4 | |
| scaffoldLengthChange | 7 | |
| scaffoldCountChange | 3 | |
| scaffoldN50Change | 0.7 | |
| gapCount | 300 | |
| autosomesCount | 23 | |
| manualNote | This is a manual note. | |
| buscoLineage | Eukaryota_odb10 | |
| buscoN | 5 | |
| buscoCompleteness | 97 | |
| buscoSingle | 93 | |
| buscoDuplicated | 4 |
