Common toad · Bufo bufo (Linnaeus, 1758)
EBP Reference Genome
Permissions Declared
Openly Accessible Data
Contributors (view full details)
| Metric | Value | Links |
|---|---|---|
| DOI | 10.1234/ebpr23.6666 | |
| bioproject | PRJEB45678 | NCBI · ENA |
| biosample | SAMEA45678901 | NCBI · ENA |
| tolid | bBufBuf1 | |
| pacbioSampleAccession | SAMEA45678902 | |
| pacbioOrganismPart | skin | |
| hicTolid | bBufBuf2 | |
| hicSampleAccession | SAMEA45678903 | |
| hicOrganismPart | blood | |
| rnaTolid | bBufBuf3 | |
| rnaSampleAccession | SAMEA45678904 | |
| rnaOrganismPart | liver | |
| assemblyName | bBufBuf1.1 | |
| assemblyAccession | GCA_456789012.1 | |
| alternateAccession | GCA_456789013.1 | |
| lengthTotalMb | 2800 | Definition |
| contigCount | 500 | Definition |
| contigN50 | 18 | |
| scaffoldCount | 100 | |
| scaffoldN50 | 65 | Definition |
| longestScaffold | 130 | Definition |
| QV | 60.5 | Definition |
| k_mer | 100 | |
| buscoString | C:96.5%[S:92.5%,D:4.0%],F:2.5%,M:1.0%,n:4,800 eukaryota_odb10 | |
| assemblyPercent | 98.5 | |
| sexChromosomes | XY | |
| lengthMitoKb | 16.8 | |
| lengthPlastidKb | 0 | |
| chromosomeCount | 22 | |
| proteinGeneCount | 21000 | |
| nonCodingCount | 1600 | |
| transcriptCount | 52000 | |
| observedSex | male | |
| pacbioCollectionLocation | Europe | |
| pacbioBasesGb | 45 | |
| pacbioReadsMillions | 4.5 | |
| lrCov | 65 | |
| hicBaseCountGb | 160 | |
| hicReadsMillions | 950 | |
| manualBreaksAndJoins | 18 | |
| manualHaplotigRemovals | 3 | |
| scaffoldLengthChange | 6.5 | |
| scaffoldCountChange | 2 | |
| scaffoldN50Change | 0.6 | |
| gapCount | 275 | |
| autosomesCount | 21 | |
| manualNote | This is a manual note. | |
| buscoLineage | Eukaryota_odb10 | |
| buscoN | 4 | |
| buscoCompleteness | 96.5 | |
| buscoSingle | 92.5 | |
| buscoDuplicated | 4 |
