Common frog · Rana temporaria (Linnaeus, 1758)
EBP Reference Genome
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Openly Accessible Data
Contributors (view full details)
| Metric | Value | Links |
|---|---|---|
| DOI | 10.1234/ebpr23.8888 | |
| bioproject | PRJEB67890 | NCBI · ENA |
| biosample | SAMEA67890123 | NCBI · ENA |
| tolid | cCanFam1 | |
| pacbioSampleAccession | SAMEA67890124 | |
| pacbioOrganismPart | skin | |
| hicTolid | cCanFam2 | |
| hicSampleAccession | SAMEA67890125 | |
| hicOrganismPart | blood | |
| rnaTolid | cCanFam3 | |
| rnaSampleAccession | SAMEA67890126 | |
| rnaOrganismPart | liver | |
| assemblyName | cCanFam1.1 | |
| assemblyAccession | GCA_678901234.1 | |
| alternateAccession | GCA_678901235.1 | |
| lengthTotalMb | 2500 | Definition |
| contigCount | 400 | Definition |
| contigN50 | 15 | |
| scaffoldCount | 80 | |
| scaffoldN50 | 60 | Definition |
| longestScaffold | 120 | Definition |
| QV | 61 | Definition |
| k_mer | 100 | |
| buscoString | C:96.0%[S:92.0%,D:4.0%],F:2.0%,M:2.0%,n:4,500 eukaryota_odb10 | |
| assemblyPercent | 98 | |
| sexChromosomes | XY | |
| lengthMitoKb | 17 | |
| lengthPlastidKb | 0 | |
| chromosomeCount | 23 | |
| proteinGeneCount | 21000 | |
| nonCodingCount | 1600 | |
| transcriptCount | 52000 | |
| observedSex | male | |
| pacbioCollectionLocation | Europe | |
| pacbioBasesGb | 40 | |
| pacbioReadsMillions | 4 | |
| lrCov | 60 | |
| hicBaseCountGb | 160 | |
| hicReadsMillions | 1000 | |
| manualBreaksAndJoins | 15 | |
| manualHaplotigRemovals | 3 | |
| scaffoldLengthChange | 6 | |
| scaffoldCountChange | 2 | |
| scaffoldN50Change | 0.6 | |
| gapCount | 250 | |
| autosomesCount | 22 | |
| manualNote | This is a manual note. | |
| buscoLineage | Eukaryota_odb10 | |
| buscoN | 4 | |
| buscoCompleteness | 96 | |
| buscoSingle | 92 | |
| buscoDuplicated | 4 |
