Basilisk · Basiliscus petrificus (Merlinus, 1022)
EBP Reference Genome
Permissions Declared
Openly Accessible Data
Contributors (view full details)
| Metric | Value | Links |
|---|---|---|
| DOI | 10.1234/ebpr23.1616 | |
| bioproject | PRJEB45678 | NCBI · ENA |
| biosample | SAMEA45678901 | NCBI · ENA |
| tolid | bBasPet1 | |
| pacbioSampleAccession | SAMEA45678902 | |
| pacbioOrganismPart | skin | |
| hicTolid | bBasPet2 | |
| hicSampleAccession | SAMEA45678903 | |
| hicOrganismPart | blood | |
| rnaTolid | bBasPet3 | |
| rnaSampleAccession | SAMEA45678904 | |
| rnaOrganismPart | liver | |
| assemblyName | bBasPet1.1 | |
| assemblyAccession | GCA_456789012.1 | |
| alternateAccession | GCA_456789013.1 | |
| lengthTotalMb | 2100 | Definition |
| contigCount | 420 | Definition |
| contigN50 | 18 | |
| scaffoldCount | 90 | |
| scaffoldN50 | 62 | Definition |
| longestScaffold | 120 | Definition |
| QV | 62.3 | Definition |
| k_mer | 100 | |
| buscoString | C:98.2%[S:94.2%,D:4.0%],F:2.1%,M:0.1%,n:5,200 eukaryota_odb10 | |
| assemblyPercent | 99.7 | |
| sexChromosomes | ZW | |
| lengthMitoKb | 17.4 | |
| lengthPlastidKb | 0 | |
| chromosomeCount | 24 | |
| proteinGeneCount | 23000 | |
| nonCodingCount | 1800 | |
| transcriptCount | 54000 | |
| observedSex | female | |
| pacbioCollectionLocation | South America | |
| pacbioBasesGb | 62 | |
| pacbioReadsMillions | 6.2 | |
| lrCov | 82 | |
| hicBaseCountGb | 180 | |
| hicReadsMillions | 1120 | |
| manualBreaksAndJoins | 26 | |
| manualHaplotigRemovals | 4 | |
| scaffoldLengthChange | 7.6 | |
| scaffoldCountChange | 3 | |
| scaffoldN50Change | 0.7 | |
| gapCount | 360 | |
| autosomesCount | 23 | |
| manualNote | This is a manual note. | |
| buscoLineage | Eukaryota_odb10 | |
| buscoN | 5 | |
| buscoCompleteness | 98.2 | |
| buscoSingle | 94.2 | |
| buscoDuplicated | 4 |
